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string-db

Here are 4 public repositories matching this topic...

MuhammadMuneeb007 / PhenotypeToGeneDownloaderR

A comprehensive bioinformatics pipeline for downloading and analyzing genes associated with specific phenotypes from multiple biological databases. This package provides both R scripts for gene retrieval and Python analysis tools for downstream analysis.

bioinformatics r genomics computational-biology gtex phenotypes uniprot opentargets kegg reactome disgenet disease-gene-association hpo omim gene-prioritization literature-mining string-db phenotype-to-gene

Updated Apr 28, 2026
Python

Anshuman-Roy-22 / pd-netprox

Protein-network proximity analysis for Parkinson's disease candidate prioritization using STRING and GTEx substantia nigra expression.

python bioinformatics genomics reproducible-research gtex parkinsons-disease dijkstra-shortest-path network-biology substantia-nigra-pars-compacta-da-cell string-db disease-genetics

Updated Apr 2, 2026
Python

s4mehotblack / ClusterME

Extract, cluster and analyse gene expression patterns using GTEx data and STRING-db and Enrichr APIs

gtex enrichment-analysis enrichr bioinformatics-tool decodeme string-db

Updated Dec 27, 2025
Python

implicated-collectable725 / pd-netprox

Analyze Parkinson’s disease candidate genes with protein-network proximity using STRING and GTEx substantia nigra data for prioritization

python bioinformatics genomics reproducible-research parkinsons-disease dijkstra-shortest-path network-biology substantia-nigra-pars-compacta-da-cell string-db disease-genetics

Updated Apr 29, 2026

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