[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.

DNA processing and manipulating for PHP 8.3 / PHP 8.4

fast and comprehensive k-mer counting package

A library for reading and writing DNA test kit files in PHP.

Package to parse DNA kit files, and import them into Laravel

Qiime2 based pipeline designed to facilitate and standardise ecological studies by metabarcoding using Illumina Miseq data

Program do ustalania rozmiarów fragmentów DNA na podstawie tempa migracji na żelu (1992-94)

Cloud-based Web Application to compute the longest common substring between two DNA strings.

Small school project to convert from DNA to mRNA to proteins using C++

DNAc is a programming language for DNAs.

Various utilities for working with FASTA nucleotide sequences

Accepts any DNA sequence and processes it, producing various pieces of information such as a list of all open reading frames, reverse complement sequence, GC content, all possible proteins .etc

Miscellaneous Scripts in Bioinformatics

HCAT CLI is a command line interface tool to analyze DNA sequence data.

R package for estimating copy-number variation from targeted DNA sequencing

Repository that has the standard DNA, RNA and Protein Objects and the standard methods to interact with them.

PARMIK is a fast and memory-efficient tool for identifying the "Partial Match" region between two genomic sequences.

Counts all SNP mutations in .map file