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Multiple failures with small LLM (Ollama)

Status: Open.

#160 In reactome/reactome_chatbot;

· Ehsanstp opened on Apr 26, 2026

Bug: asyncio.run() in __del__ causes RuntimeError crash in production

Status: Open.

#154 In reactome/reactome_chatbot;

· bleedblack1 opened on Mar 15, 2026

feat: implement multi-hop pathway traversal for deeper mechanistic reasoning

Status: Open.

#152 In reactome/reactome_chatbot;

· bhavyakeerthi3 opened on Mar 15, 2026

bug: AgentGraph hardcodes LLM and embedding models — ignores YAML configuration

Status: Open.

#148 In reactome/reactome_chatbot;

· bhavyakeerthi3 opened on Mar 15, 2026

bug: asyncio.run() inside AgentGraph destructor triggers RuntimeError and leaks connections

Status: Open.

#146 In reactome/reactome_chatbot;

· bhavyakeerthi3 opened on Mar 14, 2026

bug: flow_context key missing from CrossDatabaseState — topology data silently lost between nodes

Status: Open.

#145 In reactome/reactome_chatbot;

· bhavyakeerthi3 opened on Mar 14, 2026

feat: support causal chain queries for mechanistic biological reasoning

Status: Open.

#143 In reactome/reactome_chatbot;

· bhavyakeerthi3 opened on Mar 13, 2026

feat: route questions to RAG or MCP tools based on query intent

Status: Open.

#141 In reactome/reactome_chatbot;

· GovindhKishore opened on Mar 12, 2026

fix(retriever): HybridRetriever passes unlimited documents to LLM with no token budget

Status: Open.

#138 In reactome/reactome_chatbot;

· GovindhKishore opened on Mar 10, 2026

feat: integrate Reactome MCP tools into LangGraph agent via LangChain tool wrappers

Status: Open.

#136 In reactome/reactome_chatbot;

· GovindhKishore opened on Mar 10, 2026

bug: Missing automated test suite causes undetected regressions across critical modules

Status: Open.

#134 In reactome/reactome_chatbot;

· bhavyakeerthi3 opened on Mar 10, 2026

feat: HybridRetriever passes noisy, low-relevance documents to the LLM

Status: Open.

#132 In reactome/reactome_chatbot;

· bhavyakeerthi3 opened on Mar 9, 2026