Update last/* modules to LAST 1651 and Samtools 1.23.1

[charles-plessy]

This PR updates LAST to version 1651 and Samtools to 1.23.1, and refreshes the snaps accordingly.

In addition, it:

• removes a temporary workaround related to earlier versions of Samtools always connecting to the EBI when opening a CRAM files;
• allows CRAM version 3.1 now that the bam plugin of nf-test supports it;
• passes --reference to samtools sort if the CRAM header does not provide an appropriate path to a local file (because samtools became stricter about that).

PR checklist

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
• If you've added a new tool - have you followed the module conventions in the contribution docs
• If necessary, include test data in your PR.
• Remove all TODO statements.
• Broadcast software version numbers to topic: versions - See version_topics
• Follow the naming conventions.
• Follow the parameters requirements.
• Follow the input/output options guidelines.
• Add a resource label
• Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • For modules:
    • nf-core modules test <MODULE> --profile docker
    • nf-core modules test <MODULE> --profile singularity
    • nf-core modules test <MODULE> --profile conda
  • For subworkflows:
    • nf-core subworkflows test <SUBWORKFLOW> --profile docker
    • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
    • nf-core subworkflows test <SUBWORKFLOW> --profile conda