[codex] Remove executor jsonc source sync

[RhysSullivan]

Summary

Remove the local app's executor.jsonc source replay and write-back path while preserving executor.jsonc plugin-manifest loading.

What changed

• Stop creating and passing a ConfigFileSink into local plugin constructors, so source add/remove operations no longer mirror into executor.jsonc.
• Continue loading plugins from executor.jsonc#plugins at runtime and in the Vite plugin-client bundling path.
• Delete the boot-time config source sync module and tests that only covered source replay.
• Update the desktop smoke test to register its OpenAPI source through executor tools instead of writing source JSONC.
• Refresh stale desktop/MCP UI copy that implied sources should be edited in executor.jsonc.

Impact

executor.jsonc can still be used for plugin parsing, but it is no longer treated as a source of truth for sources on local startup or source mutation. Source state stays in storage.

Validation

• bun run --filter @executor-js/local test -- src/server
• bun run --filter @executor-js/local typecheck
• bun run --filter @executor-js/desktop typecheck
• bun run --filter @executor-js/plugin-mcp typecheck

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commit: dfe53ae