Add test fixtures for the riker module#378
Open
tfenne wants to merge 1 commit intoMultiQC:mainfrom
Open
Conversation
Adds example outputs from the six riker subtools that the new MultiQC module parses (alignment, basic, gcbias, hybcap, isize, wgs). Files are generated from public 1000G data (HG00240 exome capture; HG03953 WGS) using riker against the parallel PR that adds a `sample` column to every output (fulcrumgenomics/riker#21). Companion to the MultiQC PR adding the riker module.
8 tasks
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Adds example outputs from the six riker subtools that the new MultiQC
rikermodule parses (alignment,basic,gcbias,hybcap,isize,wgs).Companion to MultiQC PR #XXXX — needed for
tests/test_modules_run.py::test_all_modules[riker]and the module docs autogen script.Source data:
All files were generated against riker commit fulcrumgenomics/riker@ad029ae which will be released in riker 0.2.0 within the next 1-5 days.