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docs: update README to include information on exactly what sorts of hyperparameters can be tuned with Optuna and how to specify them

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#70 In LadnerLab/PepSeqPred;

· jeffreyHoelzel opened on May 5, 2026

refactor: look into deprecating seeded run mode in favor of ensemble-kfold only

refactor

Status: Open.

#69 In LadnerLab/PepSeqPred;

· jeffreyHoelzel opened on May 5, 2026

docs: ensure "PV1-style" is removed and replaced with expected fasta header and metadata formats

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#68 In LadnerLab/PepSeqPred;

· jeffreyHoelzel opened on May 5, 2026

docs: ensure names of each file make sense

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#67 In LadnerLab/PepSeqPred;

· jeffreyHoelzel opened on May 5, 2026

docs: add small sample dataset that users could run locally using PepSeqPred API

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#66 In LadnerLab/PepSeqPred;

· jeffreyHoelzel opened on May 5, 2026

docs: update webpage with results from new training

chore

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#64 In LadnerLab/PepSeqPred;

· jeffreyHoelzel opened on May 3, 2026

feat: develop logic to train on a combination of viral, bacterial, and fungal data

featureNew feature or requestNew feature or request

Status: Open.

#62 In LadnerLab/PepSeqPred;

· jeffreyHoelzel opened on Apr 23, 2026