Draft approach to deal with test failures

.github/workflows/run-pre-commit.yml

@@ -23,7 +23,7 @@ jobs:
         run: |
           python -m pip install --upgrade pip
           pip install pyogrio
-          pip install .[dev]
+          pip install pre-commit ruff black
       - name: pre-commit checks
         run: |
           pre-commit run black --all-files

CITATION.cff

@@ -82,4 +82,4 @@ license:
 message: If you use this software, please cite it using the metadata from this file.
 title: "PyEarthTools: Machine learning for Earth system science"
 type: software
-version: 0.5.1
+version: 0.6.0

packages/data/src/pyearthtools/data/transforms/mask.py

@@ -108,9 +108,10 @@ def __filter(
         operator_package = np
         if isinstance(data, (xr.Dataset, xr.DataArray)):
             operator_package = xr
-            data = type(data)(data)  # type: ignore
+            data = data.copy()
             if search_data is not None:
-                search_data = type(search_data)(search_data)  # type: ignore
+                # search_data = type(search_data)(search_data)  # type: ignore
+                search_data = search_data.copy()
 
         operations_dict = {
             ">": operator.gt,

packages/pipeline/src/pyearthtools/pipeline/exceptions.py

@@ -102,9 +102,6 @@ def __enter__(self):
 
     def __exit__(self, exc_type, exc_val, traceback):
 
-        # if exc_type:
-        #     import pudb; pudb.set_trace()
-
         if exc_type in self._exceptions:
             self._count += 1
             self._messages.append(str(exc_val))

packages/pipeline/src/pyearthtools/pipeline/operations/xarray/reshape.py

@@ -214,7 +214,7 @@ def __init__(self, coordinate: Hashable):
         self._coordinate = coordinate
 
     def apply_func(self, dataset: xr.Dataset) -> xr.Dataset | xr.DataArray:
-        dataset = type(dataset)(dataset)
+        dataset = dataset.copy()
 
         for coord in self._coordinate:
             dtype = dataset.attrs.get(f"{coord}-dtype", "int32")

packages/pipeline/tests/operations/xarray/test_xarray_reshape.py

@@ -118,11 +118,6 @@ def test_CoordinateFlatten_skip_missing():
 
 
 def test_undo_CoordinateFlatten():
-
-    import sys
-
-    print(f"Recursion limit set to {str(sys.getrecursionlimit())}")
-
     f = reshape.CoordinateFlatten(["height"])
     f_output = f.apply(SIMPLE_DS2)
     f_undone = f.undo(f_output)

pyproject.toml

@@ -26,38 +26,38 @@ PyEarthTools: Machine learning for Earth system science.
 version = "0.6.0"
 
 dependencies = [
-"pyearthtools-utils>=0.5.1",
-"pyearthtools-data>=0.5.1",
-"pyearthtools-pipeline>=0.5.1",
-"pyearthtools-training>=0.5.1",
-"pyearthtools-zoo>=0.5.1",
+"pyearthtools-utils>=0.6.0",
+"pyearthtools-data>=0.6.0",
+"pyearthtools-pipeline>=0.6.0",
+"pyearthtools-training>=0.6.0",
+"pyearthtools-zoo>=0.6.0",
 ]
 
 [project.optional-dependencies]
 utils = [
-    "pyearthtools-utils>=0.5.1",
+    "pyearthtools-utils>=0.6.0",
 ]
 data = [
-    "pyearthtools-data>=0.5.1",
+    "pyearthtools-data>=0.6.0",
 ]
 pipeline = [
-    "pyearthtools-pipeline>=0.5.1",
+    "pyearthtools-pipeline>=0.6.0",
 ]
 training = [
-    "pyearthtools-training>=0.5.1",
+    "pyearthtools-training>=0.6.0",
 ]
 zoo = [
-    "pyearthtools-zoo>=0.5.1",
+    "pyearthtools-zoo>=0.6.0",
 ]
 all = [
-    "pyearthtools-utils>=0.5.1",
-    "pyearthtools-data[all]>=0.5.1",
-    "pyearthtools-pipeline[all]>=0.5.1",
-    "pyearthtools-training[all]>=0.5.1",
-    "pyearthtools-zoo>=0.5.1",
+    "pyearthtools-utils>=0.6.0",
+    "pyearthtools-data[all]>=0.6.0",
+    "pyearthtools-pipeline[all]>=0.6.0",
+    "pyearthtools-training[all]>=0.6.0",
+    "pyearthtools-zoo>=0.6.0",
 ]
 test = ["pytest", "pytest-cov", "pytest-xdist"]
-dev = ["pre-commit", "black==25.1.0", "interrogate", "ruff", "pudb"]
+dev = ["pre-commit", "black==25.1.0", "ruff", "pudb"]
 docs = [
     "sphinx",
     "myst-parser",