From 8b00de03d8502693bec8415471cea48dad5885ab Mon Sep 17 00:00:00 2001 From: Kay Robbins Date: Wed, 6 May 2026 15:18:54 -0500 Subject: [PATCH 1/2] feat: remove browser/ app (moved to hed-standard/hed-web) - Delete browser/ directory entirely - Remove Browser-tests job from tests.yml - Update README to point to hed-standard.github.io/hed-web - Update copilot-instructions.md to remove browser/ references --- .github/copilot-instructions.md | 16 - .github/workflows/tests.yml | 29 - README.md | 9 +- browser/index.html | 30 - browser/package-lock.json | 3300 ---------------------- browser/package.json | 26 - browser/public/.nojekyll | 0 browser/public/favicon.ico | Bin 253502 -> 0 bytes browser/src/bids/BidsWebAccessor.js | 108 - browser/src/bids/BidsWebAccessor.spec.js | 80 - browser/src/components/ErrorDisplay.jsx | 75 - browser/src/components/FileInput.jsx | 51 - browser/src/components/FileList.jsx | 9 - browser/src/components/FolderInput.jsx | 56 - browser/src/components/NavOptions.jsx | 54 - browser/src/main.jsx | 60 - browser/src/schema/init.js | 80 - browser/src/schema/loader.js | 114 - browser/src/schema/loader.spec.js | 18 - browser/src/schema/vite-importer.js | 2 - browser/src/styles/styles.css | 7 - browser/src/utils/files.js | 34 - browser/src/validate_dataset.jsx | 241 -- browser/src/validate_file.jsx | 224 -- browser/validate_dataset.html | 26 - browser/validate_file.html | 26 - browser/vite-importer-transformer.cjs | 7 - browser/vite.config.js | 111 - browser/vitest.config.js | 38 - 29 files changed, 6 insertions(+), 4825 deletions(-) delete mode 100644 browser/index.html delete mode 100644 browser/package-lock.json delete mode 100644 browser/package.json delete mode 100644 browser/public/.nojekyll delete mode 100644 browser/public/favicon.ico delete mode 100644 browser/src/bids/BidsWebAccessor.js delete mode 100644 browser/src/bids/BidsWebAccessor.spec.js delete mode 100644 browser/src/components/ErrorDisplay.jsx delete mode 100644 browser/src/components/FileInput.jsx delete mode 100644 browser/src/components/FileList.jsx delete mode 100644 browser/src/components/FolderInput.jsx delete mode 100644 browser/src/components/NavOptions.jsx delete mode 100644 browser/src/main.jsx delete mode 100644 browser/src/schema/init.js delete mode 100644 browser/src/schema/loader.js delete mode 100644 browser/src/schema/loader.spec.js delete mode 100644 browser/src/schema/vite-importer.js delete mode 100644 browser/src/styles/styles.css delete mode 100644 browser/src/utils/files.js delete mode 100644 browser/src/validate_dataset.jsx delete mode 100644 browser/src/validate_file.jsx delete mode 100644 browser/validate_dataset.html delete mode 100644 browser/validate_file.html delete mode 100644 browser/vite-importer-transformer.cjs delete mode 100644 browser/vite.config.js delete mode 100644 browser/vitest.config.js diff --git a/.github/copilot-instructions.md b/.github/copilot-instructions.md index cb41a2cf..be1cb0d7 100644 --- a/.github/copilot-instructions.md +++ b/.github/copilot-instructions.md @@ -51,10 +51,6 @@ Source code is plain JavaScript (`.js`) in `src/`. TypeScript type declarations - `utils/` — General utilities - `array.js`, `string.js`, `files.js`, `paths.js`, `hedStrings.js`, `memoizer.js`, `xml.js` -**Browser App** (`browser/`): - -- A separate Vite/React app for browser-based HED validation. Has its own `package.json` and `vite.config.js`. - ## Common commands ```powershell @@ -75,14 +71,6 @@ npm run clear_jest_cache # Clear Jest cache npx jest tests/otherTests/hed.spec.js ``` -**Browser app (separate package):** - -```powershell -cd browser ; npm install ; npm test # Run browser (Vitest) tests -cd browser ; npm run build # Build browser app -cd browser ; npm run preview # Serve browser app locally -``` - ## Testing structure ``` @@ -96,8 +84,6 @@ tests/ spec_tests/ jsonTests.spec.js # Runs the HED spec test suite javascriptTests.json -browser/ - vitest.config.js # Separate Vitest suite for browser components ``` Jest is configured via `jest.config.js` and `babel.config.js`. Note: `jest.config.js` has a @@ -120,7 +106,6 @@ do not remove it or those imports will fail in tests. - `tests/` — Jest test suite - `spec_tests/` — HED spec-level tests - `types/` — TypeScript type declarations (`index.d.ts`, `test.ts`) -- `browser/` — Vite/React browser demo app - `dist/` — Compiled output, generated by `npm run build` (not committed) - `scripts/` — Helper scripts for type testing - `esbuild.mjs` — Build configuration @@ -134,7 +119,6 @@ CI runs on every push/PR to `main`. Replicate these locally before opening a PR: | --------------------- | --------------------------------------------------- | -------------------------------------------------- | | `tests.yml` | `npm ci ; npm test` | Runs `tests/` suite on Node 22, lts/\*, latest | | `tests.yml` | `npm ci ; npm run testSpecs` | Runs `spec_tests/` suite | -| `tests.yml` (browser) | `cd browser ; npm install ; npm test` | Separate Vitest browser suite | | `test-types.yml` | `npm ci ; npm run build ; npm pack` then type-check | **Build required before type check** | | `codeql.yml` | automatic | CodeQL security scan (JavaScript) | | `codespell.yaml` | automatic | Spell check source files | diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index 4e8e793c..04cf86d2 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -56,33 +56,4 @@ jobs: - name: Run JSON spec tests with Node.js ${{ matrix.node-version }} run: npm run testSpecs - Browser-tests: - runs-on: ubuntu-latest - - strategy: - matrix: - node-version: [22.x, lts/*, 'node'] - steps: - - name: Check out the code - uses: actions/checkout@v6 - - name: Set up with Node.js ${{ matrix.node-version }} - uses: actions/setup-node@v6 - with: - node-version: ${{ matrix.node-version }} - - name: Print Node.js version and CI environment - run: | - echo "Node.js version: $(node -v)" - echo "Environment: CI=${{ env.CI }}" - - name: Download root dependencies - run: npm ci - - name: Clean browser dependencies - working-directory: ./browser - run: | - rm -rf package-lock.json node_modules - - name: Install browser dependencies - working-directory: ./browser - run: npm install - - name: Run browser tests with Node.js ${{ matrix.node-version }} - working-directory: ./browser - run: npm test diff --git a/README.md b/README.md index 5eec29f1..87f1c97c 100644 --- a/README.md +++ b/README.md @@ -23,11 +23,11 @@ A sample of current `hed-validator` usage in BIDS can be found in the BIDS valid ## Online validation A browser-based validator that uses this package is available at -[www.hedtags.org/hed-javascript](https://www.hedtags.org/hed-javascript). +[hed-standard.github.io/hed-web](https://hed-standard.github.io/hed-web/). This online validator allows users to validate HED annotations in a web browser without needing to install any software or upload files to a server. The API documentation for this package is available at -[www.hedtags.org/hed-javascript/docs](https://www.hedtags.org/hed-javascript/docs). +[hed-standard.github.io/hed-javascript](https://hed-standard.github.io/hed-javascript/). A number of tools for HED, including validation are also available in a Python-based [online validator](https://hedtools.org/hed). @@ -68,8 +68,11 @@ be done as PRs (pull requests) to the `main` branch. ### Running the browser locally +The browser app has moved to the [hed-web](https://github.com/hed-standard/hed-web) repository. + ```code -cd browser +git clone https://github.com/hed-standard/hed-web +cd hed-web npm install npm run build npm run preview diff --git a/browser/index.html b/browser/index.html deleted file mode 100644 index dd27dcbc..00000000 --- a/browser/index.html +++ /dev/null @@ -1,30 +0,0 @@ - - - - - - - - HED Validator - - - - - - - - - - -
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w5g-CYfCvx)B0vO)01+SpM1Tko0U|&IhyW2F0z`la5CI}U1c(3;NCX1^50y*lrvLx| diff --git a/browser/src/bids/BidsWebAccessor.js b/browser/src/bids/BidsWebAccessor.js deleted file mode 100644 index c22c8f7c..00000000 --- a/browser/src/bids/BidsWebAccessor.js +++ /dev/null @@ -1,108 +0,0 @@ -import { BidsFileAccessor } from '../../../src/bids/datasetParser.js' -import { buildSchemasFromVersion } from '../schema/init.js' -import { BidsHedIssue } from '../../../src/bids/types/issues.js' - -/** - * Build HED schemas from a dataset description for the browser environment. - * @param {object} description The dataset_description.json data. - * @returns {Promise} The HED schemas. - */ -async function buildBidsSchemas(description) { - const hedVersionString = description.jsonData?.HEDVersion - if (!hedVersionString) { - return null - } - try { - return await buildSchemasFromVersion(hedVersionString) - } catch (e) { - throw new BidsHedIssue(e.issue) - } -} - -/** - * Processes a list of files to determine the dataset root and create a relative file map. - * @param {FileList|File[]} fileInput The files from a webkitdirectory upload. - * @returns {{datasetRootDirectory: string, fileMap: Map}} - * @private - */ -function _processFileList(fileInput) { - const fileList = Array.from(fileInput) - if (fileList.length === 0) { - return { datasetRootDirectory: '', fileMap: new Map() } - } - // Find dataset_description.json to determine the root path prefix. - const descriptionFile = fileList.find((f) => (f.webkitRelativePath || f.name).endsWith('dataset_description.json')) - let prefix = '' - if (descriptionFile) { - const path = descriptionFile.webkitRelativePath || descriptionFile.name - const lastSlashIndex = path.lastIndexOf('/') - // Check if the file is in a subdirectory - if (lastSlashIndex > -1) { - prefix = path.substring(0, lastSlashIndex) - } - // If lastSlashIndex is -1, the file is at the root, and prefix remains ''. This is correct. - } else { - // Fallback: if no dataset_description.json, assume the first directory level is the root. - const firstPath = fileList[0]?.webkitRelativePath || '' - const rootDirEndIndex = firstPath.indexOf('/') - if (rootDirEndIndex > -1) { - prefix = firstPath.substring(0, rootDirEndIndex) - } - } - - const datasetRootDirectory = prefix - const fileMap = new Map() - const prefixWithSlash = prefix ? prefix + '/' : '' - - for (const file of fileList) { - const webkitRelativePath = file.webkitRelativePath || file.name - if (!webkitRelativePath) continue - - const relativePath = webkitRelativePath.startsWith(prefixWithSlash) - ? webkitRelativePath.substring(prefixWithSlash.length) - : webkitRelativePath - - if (relativePath) { - fileMap.set(relativePath, file) - } - } - return { datasetRootDirectory, fileMap } -} - -// Subclass for web environment -export class BidsWebAccessor extends BidsFileAccessor { - /** - * Factory method to create a BidsWebAccessor from a browser FileList. - * @param {FileList|File[]} fileInput The files from a webkitdirectory upload. - * @returns {Promise} - * @override - */ - static async create(fileInput) { - const { datasetRootDirectory, fileMap } = _processFileList(fileInput) - return new BidsWebAccessor(datasetRootDirectory, fileMap) - } - - /** - * Constructor for BidsWebAccessor. - * - * @param {string} datasetRootDirectory The root directory of the dataset. - * @param {Map} fileMap Map of relative file paths to file representations. - * @private - */ - constructor(datasetRootDirectory, fileMap) { - super(datasetRootDirectory, fileMap) - this.schemaBuilder = buildBidsSchemas - } - - async getFileContent(relativePath) { - const file = this.fileMap.get(relativePath) - if (!file) { - return null - } - if (typeof file.text === 'function') { - return await file.text() - } else { - throw new Error(`Cannot read file ${relativePath}: File object in map lacks .text() method.`) - } - } -} diff --git a/browser/src/bids/BidsWebAccessor.spec.js b/browser/src/bids/BidsWebAccessor.spec.js deleted file mode 100644 index 90af75e4..00000000 --- a/browser/src/bids/BidsWebAccessor.spec.js +++ /dev/null @@ -1,80 +0,0 @@ -import { describe, it, expect } from 'vitest' -import { BidsWebAccessor } from './BidsWebAccessor.js' - -// Mock File object for BidsWebAccessor tests -const MockFile = class { - constructor(content, name, webkitRelativePath) { - this.content = content - this.name = name || 'mockfile.txt' - this.size = content.length - this.type = 'text/plain' - this.webkitRelativePath = webkitRelativePath - } - async text() { - return this.content - } -} - -describe('BidsWebAccessor', () => { - describe('create', () => { - it('should handle an empty file list', async () => { - const accessor = await BidsWebAccessor.create([]) - expect(accessor.datasetRootDirectory).toBe('') - expect(accessor.fileMap.size).toBe(0) - }) - - it('should extract the root directory and create a relative file map', async () => { - const fileInput = [ - new MockFile('{}', 'dataset_description.json', 'my-dataset/dataset_description.json'), - new MockFile('data', 'sub-01_events.tsv', 'my-dataset/sub-01/sub-01_events.tsv'), - ] - const accessor = await BidsWebAccessor.create(fileInput) - expect(accessor.datasetRootDirectory).toBe('my-dataset') - expect(Array.from(accessor.fileMap.keys()).sort()).toEqual( - ['dataset_description.json', 'sub-01/sub-01_events.tsv'].sort(), - ) - expect(accessor.fileMap.get('dataset_description.json')).toBe(fileInput[0]) - }) - - it('should handle files in the root without a parent directory', async () => { - const fileInput = [ - new MockFile('{}', 'dataset_description.json', 'dataset_description.json'), - new MockFile('data', 'participants.tsv', 'participants.tsv'), - ] - const accessor = await BidsWebAccessor.create(fileInput) - expect(accessor.datasetRootDirectory).toBe('') - expect(Array.from(accessor.fileMap.keys()).sort()).toEqual( - ['dataset_description.json', 'participants.tsv'].sort(), - ) - }) - }) - - describe('getFileContent', () => { - it('should return null if the file is not in the map', async () => { - const accessor = await BidsWebAccessor.create([]) - const content = await accessor.getFileContent('nonexistent.txt') - expect(content).toBeNull() - }) - - it('should call file.text() and return its result', async () => { - const mockFile = new MockFile('file content', 'dataset_description.json', 'my-dataset/dataset_description.json') - const fileInput = [mockFile] - const accessor = await BidsWebAccessor.create(fileInput) - const content = await accessor.getFileContent('dataset_description.json') - expect(content).toBe('file content') - }) - - it('should throw an error if the file object lacks a .text() method', async () => { - const fileInput = [ - { - name: 'dataset_description.json', - webkitRelativePath: 'my-dataset/dataset_description.json', - }, - ] - const accessor = await BidsWebAccessor.create(fileInput) - await expect(accessor.getFileContent('dataset_description.json')).rejects.toThrow( - 'Cannot read file dataset_description.json: File object in map lacks .text() method.', - ) - }) - }) -}) diff --git a/browser/src/components/ErrorDisplay.jsx b/browser/src/components/ErrorDisplay.jsx deleted file mode 100644 index aac499f0..00000000 --- a/browser/src/components/ErrorDisplay.jsx +++ /dev/null @@ -1,75 +0,0 @@ -import React from 'react' - -// Component to display validation errors -export const ErrorDisplay = ({ errors, downloadableErrors }) => { - if (!errors || errors.length === 0) { - return ( -
-

No validation issues found.

-
- ) - } - - const getSeverityClass = (severity) => { - if (severity === 'warning') return 'border-yellow-500' - return 'border-red-500' // Default to error - } - - const handleDownload = () => { - const errorsToDownload = downloadableErrors || errors - const data = JSON.stringify(errorsToDownload, null, 2) - const blob = new Blob([data], { type: 'text/plain' }) - const url = URL.createObjectURL(blob) - const link = document.createElement('a') - link.href = url - link.download = 'hed_validation_issues.json' - document.body.appendChild(link) - link.click() - document.body.removeChild(link) - URL.revokeObjectURL(url) - } - - return ( -
-
-

Validation Issues Found

- -
-
- {errors.map((error, index) => { - let locationString = '' - if (error.location) { - locationString += `Location: ${error.location}` - } - const lineNumber = error.line || error.hedIssue?.parameters?.tsvLine - if (lineNumber) { - if (locationString) { - locationString += ', ' - } - locationString += `Line: ${lineNumber}` - } - if (error.hedIssue?.parameters?.sidecarKey) { - if (locationString) { - locationString += ', ' - } - locationString += `Sidecar column: ${error.hedIssue.parameters.sidecarKey}` - } - return ( -
-

{error.issueMessage}

- {locationString &&

{locationString}

} -
- ) - })} -
-
- ) -} diff --git a/browser/src/components/FileInput.jsx b/browser/src/components/FileInput.jsx deleted file mode 100644 index 991a3bf7..00000000 --- a/browser/src/components/FileInput.jsx +++ /dev/null @@ -1,51 +0,0 @@ -import React, { useState } from 'react' - -// A reusable file input component with updated layout and styling -export const FileInput = ({ id, buttonText, tooltip, accept, onFileSelect, isLoading }) => { - const [fileName, setFileName] = useState('') - - const handleFileChange = (e) => { - if (e.target.files.length > 0) { - const file = e.target.files[0] - setFileName(file.name) - onFileSelect(file) - } else { - setFileName('') - onFileSelect(null) - } - } - - const hasFile = !!fileName - - // Determine button color - let buttonClass = '' - if (isLoading || hasFile) { - buttonClass = 'bg-gray-400 dark:bg-gray-600' - } else { - buttonClass = 'bg-blue-600 hover:bg-blue-700' - } - - return ( - // Flex container for the entire row to align items horizontally -
- {/* 1. The button with text, tooltip, fixed width, and new color logic */} - - - - {/* 2. The filename message, now with a title attribute for the tooltip */} -

- {fileName || 'No file selected'} -

-
- ) -} diff --git a/browser/src/components/FileList.jsx b/browser/src/components/FileList.jsx deleted file mode 100644 index 61e37212..00000000 --- a/browser/src/components/FileList.jsx +++ /dev/null @@ -1,9 +0,0 @@ -import React from 'react' - -export const FileList = ({ files }) => ( -
    - {files.map((file, i) => ( -
  • {file.webkitRelativePath || file.name}
    • - ))} -
-) diff --git a/browser/src/components/FolderInput.jsx b/browser/src/components/FolderInput.jsx deleted file mode 100644 index 8837c0f1..00000000 --- a/browser/src/components/FolderInput.jsx +++ /dev/null @@ -1,56 +0,0 @@ -import React, { useState } from 'react' - -export const FolderInput = ({ id, buttonText, tooltip, onFolderSelect, isLoading }) => { - const [folderName, setFolderName] = useState('') - - const handleFolderChange = (e) => { - const files = Array.from(e.target.files) - if (files.length > 0) { - // Try to get the root folder name from the first file's webkitRelativePath - const firstPath = files[0].webkitRelativePath || files[0].name - const rootFolder = firstPath.split('/')[0] - setFolderName(rootFolder) - onFolderSelect(files) - } else { - setFolderName('') - onFolderSelect([]) - } - } - - const hasFolder = !!folderName - let buttonClass = '' - if (isLoading || hasFolder) { - buttonClass = 'bg-gray-400 dark:bg-gray-600' - } else { - buttonClass = 'bg-blue-600 hover:bg-blue-700' - } - - return ( -
- - -

- {folderName || 'No folder selected'} -

-
- ) -} diff --git a/browser/src/components/NavOptions.jsx b/browser/src/components/NavOptions.jsx deleted file mode 100644 index 922e7b52..00000000 --- a/browser/src/components/NavOptions.jsx +++ /dev/null @@ -1,54 +0,0 @@ -import React from 'react' - -// A single navigation card component for a clean and reusable structure -const NavCard = ({ href, icon, title, description }) => { - return ( - -
- {icon} -
-

{title}

-

{description}

- - ) -} - -export const NavOptions = ({ base_url }) => { - const navOptions = [ - { - href: './validate_dataset.html', - icon: HED Icon, - title: 'Validate dataset', - description: 'Check your BIDS dataset for HED errors.', - }, - { - href: './validate_file.html', - icon: HED Icon, - title: 'Validate file', - description: 'Check a BIDS-style tsv file for HED errors.', - }, - { - href: './docs/', - icon: HED Icon, - title: 'API Docs', - description: 'Browse the technical documentation for developers.', - }, - ] - - return ( -
- {navOptions.map((option) => ( - - ))} -
- ) -} diff --git a/browser/src/main.jsx b/browser/src/main.jsx deleted file mode 100644 index beeaf344..00000000 --- a/browser/src/main.jsx +++ /dev/null @@ -1,60 +0,0 @@ -import React from 'react' -import { createRoot } from 'react-dom/client' -import { NavOptions } from './components/NavOptions' - -// --- Reusable Components --- - -// A single navigation card component for a clean and reusable structure -const NavCard = ({ href, icon, title, description }) => { - return ( - -
- {icon} -
-

{title}

-

{description}

- - ) -} - -// --- Main Application Component --- - -function App() { - const base_url = import.meta.env.BASE_URL - - return ( -
-
-

- Welcome to the HED JavaScript Validator -

-

- A suite of tools to validate HED (Hierarchical Event Descriptor) tags. -
- These tools are browser-based -- all data remains local. -

-
- -
- -
- -
-

© {new Date().getFullYear()} HED Working Group. All rights reserved.

-
-
- ) -} - -// --- Mount the App to the DOM --- - -const container = document.getElementById('root') -const root = createRoot(container) -root.render( - - - , -) diff --git a/browser/src/schema/init.js b/browser/src/schema/init.js deleted file mode 100644 index 92f7d66e..00000000 --- a/browser/src/schema/init.js +++ /dev/null @@ -1,80 +0,0 @@ -/** - * Browser-specific schema initialization. - * - * This file is a copy of the original `src/schema/init.js` with the import path for the schema loader modified - * to point to the browser-specific version. - */ -import zip from 'lodash/zip' - -import { loadSchema } from './loader' -import { setParent } from '../../../src/utils/xml.js' - -import SchemaParser from '../../../src/schema/parser' -import PartneredSchemaMerger from '../../../src/schema/schemaMerger' -import { Schema, Schemas } from '../../../src/schema/containers' -import { IssueError } from '../../../src/issues/issues' -import { splitStringTrimAndRemoveBlanks } from '../../../src/utils/string' -import { SchemasSpec } from '../../../src/schema/specs' - -/** - * Build a single schema container object from an XML file. - * - * @param {Object} xmlData The schema's XML data - * @returns {Schema} The HED schema object. - */ -const buildSchemaObject = function (xmlData) { - const rootElement = xmlData.HED - setParent(rootElement, null) - const schemaEntries = new SchemaParser(rootElement).parse() - return new Schema(xmlData, schemaEntries) -} - -/** - * Build a single merged schema container object from one or more XML files. - * - * @param {Object[]} xmlData The schemas' XML data. - * @returns {Schema} The HED schema object. - */ -const buildSchemaObjects = function (xmlData) { - const schemas = xmlData.map((data) => buildSchemaObject(data)) - if (schemas.length === 1) { - return schemas[0] - } - const partneredSchemaMerger = new PartneredSchemaMerger(schemas) - return partneredSchemaMerger.mergeSchemas() -} - -/** - * Build a schema collection object from a schema specification. - * - * @param {SchemasSpec} schemaSpecs The description of which schemas to use. - * @returns {Promise} The schema container object and any issues found. - */ -export async function buildSchemas(schemaSpecs) { - const schemaPrefixes = Array.from(schemaSpecs.data.keys()) - /* Data format example: - * [[xmlData, ...], [xmlData, xmlData, ...], ...] */ - const schemaXmlData = await Promise.all( - schemaPrefixes.map((prefix) => { - const specs = schemaSpecs.data.get(prefix) - return Promise.all(specs.map((spec) => loadSchema(spec))) - }), - ) - const schemaObjects = schemaXmlData.map(buildSchemaObjects) - const schemas = new Map(zip(schemaPrefixes, schemaObjects)) - return new Schemas(schemas) -} - -/** - * Build HED schemas from a version specification string. - * - * @param {string} hedVersionString The HED version specification string (can contain comma-separated versions). - * @returns {Promise} A Promise that resolves to the built schemas. - * @throws {IssueError} If the schema specification is invalid or schemas cannot be built. - */ -export async function buildSchemasFromVersion(hedVersionString) { - hedVersionString ??= '' - const hedVersionSpecStrings = splitStringTrimAndRemoveBlanks(hedVersionString, ',') - const hedVersionSpecs = SchemasSpec.parseVersionSpecs(hedVersionSpecStrings) - return buildSchemas(hedVersionSpecs) -} diff --git a/browser/src/schema/loader.js b/browser/src/schema/loader.js deleted file mode 100644 index 0216d270..00000000 --- a/browser/src/schema/loader.js +++ /dev/null @@ -1,114 +0,0 @@ -/** HED schema loading functions. */ - -/* Imports */ -import { IssueError } from '../../../src/issues/issues' -import { parseSchemaXML } from '../../../src/utils/xml.js' -import { schemaData } from './vite-importer.js' - -/** - * Load schema XML data from a schema version or path description. - * - * @param {SchemaSpec} schemaDef The description of which schema to use. - * @returns {Promise} The schema XML data. - * @throws {IssueError} If the schema could not be loaded. - */ -export async function loadSchema(schemaDef = null) { - const xmlData = await loadPromise(schemaDef) - if (xmlData === null) { - IssueError.generateAndThrow('invalidSchemaSpecification', { spec: JSON.stringify(schemaDef) }) - } - return xmlData -} - -/** - * Choose the schema Promise from a schema version or path description. - * - * @param {SchemaSpec} schemaDef The description of which schema to use. - * @returns {Promise} The schema XML data. - * @throws {IssueError} If the schema could not be loaded. - */ -async function loadPromise(schemaDef) { - if (schemaDef === null) { - return null - } else if (schemaDef.localPath) { - return loadLocalSchema(schemaDef.localPath) - } else if (schemaDef.localName) { - return loadBundledSchema(schemaDef) - } else { - return loadRemoteSchema(schemaDef) - } -} - -/** - * Load schema XML data from the HED GitHub repository. - * - * @param {SchemaSpec} schemaDef The standard schema version to load. - * @returns {Promise} The schema XML data. - * @throws {IssueError} If the schema could not be loaded. - */ -function loadRemoteSchema(schemaDef) { - let url - if (schemaDef.library) { - url = `https://raw.githubusercontent.com/hed-standard/hed-schemas/refs/heads/main/library_schemas/${schemaDef.library}/hedxml/HED_${schemaDef.library}_${schemaDef.version}.xml` - } else { - url = `https://raw.githubusercontent.com/hed-standard/hed-schemas/refs/heads/main/standard_schema/hedxml/HED${schemaDef.version}.xml` - } - return loadSchemaFile( - fetch(url).then((res) => res.text()), - 'remoteSchemaLoadFailed', - { spec: JSON.stringify(schemaDef) }, - ) -} - -/** - * Load schema XML data from a local file. - * - * @param {string} path The path to the schema XML data. - * @returns {Promise} The schema XML data. - * @throws {IssueError} If the schema could not be loaded. - */ -function loadLocalSchema(path) { - throw new Error('Local schema loading is not supported in the browser.') -} - -/** - * Load schema XML data from a bundled file. - * - * @param {SchemaSpec} schemaDef The description of which schema to use. - * @returns {Promise} The schema XML data. - * @throws {IssueError} If the schema could not be loaded. - */ -async function loadBundledSchema(schemaDef) { - const localPath = `../../../src/data/schemas/${schemaDef.localName}.xml` - const schemaLoader = schemaData[localPath] - if (!schemaLoader) { - // This occurs in the test environment or if the schema is not found. - return - } - try { - const data = await schemaLoader() - return parseSchemaXML(data) - } catch (error) { - const issueArgs = { spec: JSON.stringify(schemaDef), error: error.message } - IssueError.generateAndThrow('bundledSchemaLoadFailed', issueArgs) - } -} - -/** - * Actually load the schema XML file. - * - * @param {Promise} xmlDataPromise The Promise containing the unparsed XML data. - * @param {string} issueCode The issue code. - * @param {Object} issueArgs The issue arguments passed from the calling function. - *returns {Promise} The parsed schema XML data. - * @throws {IssueError} If the schema could not be loaded. - */ -async function loadSchemaFile(xmlDataPromise, issueCode, issueArgs) { - try { - const data = await xmlDataPromise - return parseSchemaXML(data) - } catch (error) { - issueArgs.error = error.message - IssueError.generateAndThrow(issueCode, issueArgs) - } -} diff --git a/browser/src/schema/loader.spec.js b/browser/src/schema/loader.spec.js deleted file mode 100644 index 7eaabc02..00000000 --- a/browser/src/schema/loader.spec.js +++ /dev/null @@ -1,18 +0,0 @@ -import { describe, it, expect } from 'vitest' -import { loadSchema } from './loader.js' -import { SchemaSpec } from '../../../src/schema/specs.js' - -describe('Browser Schema Loader', () => { - it('should return undefined when loading a bundled schema in test environment', async () => { - // Create a spec with localName to trigger bundled schema loading - const spec = new SchemaSpec('', '8.0.0', 'HED8.0.0', '') - // In a test environment, this will return undefined since schemaData is empty - const schema = await loadSchema(spec) - expect(schema).toBeUndefined() - }) - - it('should throw an error for local file loading', async () => { - const spec = new SchemaSpec('', '', '', 'path/to/local.xml') - await expect(loadSchema(spec)).rejects.toThrow('Local schema loading is not supported in the browser.') - }) -}) diff --git a/browser/src/schema/vite-importer.js b/browser/src/schema/vite-importer.js deleted file mode 100644 index ef60f8d7..00000000 --- a/browser/src/schema/vite-importer.js +++ /dev/null @@ -1,2 +0,0 @@ -// browser/src/schema/vite-importer.js -export const schemaData = import.meta.glob('../../../src/data/schemas/*.xml', { query: '?raw', import: 'default' }) diff --git a/browser/src/styles/styles.css b/browser/src/styles/styles.css deleted file mode 100644 index daa12a1e..00000000 --- a/browser/src/styles/styles.css +++ /dev/null @@ -1,7 +0,0 @@ -/* Import the Inter font from Google Fonts */ -@import url('https://fonts.googleapis.com/css2?family=Inter:wght@400;500;700&display=swap'); - -/* Apply the font globally */ -body { - font-family: 'Inter', sans-serif; -} diff --git a/browser/src/utils/files.js b/browser/src/utils/files.js deleted file mode 100644 index 11555e93..00000000 --- a/browser/src/utils/files.js +++ /dev/null @@ -1,34 +0,0 @@ -import { IssueError } from '../../../src/issues/issues' - -/** - * Read a local file (browser version - not supported). - * - * @param {string} fileName The file path. - * @returns {Promise} A promise with the file contents. - * @throws {IssueError} Always throws since local file reading is not supported in browsers. - */ -export async function readFile(fileName) { - IssueError.generateAndThrow('fileReadError', { - fileName: fileName, - message: 'Local file reading is not supported in browser environment' - }) -} - -/** - * Read a remote file using HTTPS. - * - * @param {string} url The remote URL. - * @returns {Promise} A promise with the file contents. - * @throws {IssueError} If the network read failed. - */ -export async function readHTTPSFile(url) { - const response = await fetch(url) - if (!response.ok) { - IssueError.generateAndThrow('networkReadError', { - url: url, - statusCode: response.status, - statusText: response.statusText, - }) - } - return response.text() -} diff --git a/browser/src/validate_dataset.jsx b/browser/src/validate_dataset.jsx deleted file mode 100644 index 41f7052d..00000000 --- a/browser/src/validate_dataset.jsx +++ /dev/null @@ -1,241 +0,0 @@ -import React, { useState } from 'react' -import { createRoot } from 'react-dom/client' -import { FolderInput } from './components/FolderInput' -import { ErrorDisplay } from './components/ErrorDisplay' -import { BidsWebAccessor } from './bids/BidsWebAccessor.js' -import { BidsDataset } from '@hed-javascript-root/src/bids/types/dataset.js' -import { IssueError } from '@hed-javascript-root/src/issues/issues.js' -import { BidsHedIssue } from '@hed-javascript-root/src/bids/types/issues.js' - -// --- Add TailwindCSS to the document head for immediate styling --- -;(() => { - if (!document.querySelector('script[src="https://cdn.tailwindcss.com"]')) { - const script = document.createElement('script') - script.src = 'https://cdn.tailwindcss.com' - document.head.appendChild(script) - } -})() - -/** - * --- Main Application Component --- - */ -function ValidateDatasetApp() { - const [dataset, setDataset] = useState(null) - const [errors, setErrors] = useState([]) - const [downloadableErrors, setDownloadableErrors] = useState([]) - const [isLoading, setIsLoading] = useState(false) - const [successMessage, setSuccessMessage] = useState('') - const [fatalError, setFatalError] = useState('') - const [validationStatus, setValidationStatus] = useState('') - const [fileInputKey, setFileInputKey] = useState(Date.now()) - const [checkWarnings, setCheckWarnings] = useState(false) - const [limitErrors, setLimitErrors] = useState(false) - - const getFileCounts = (dataset) => { - const counts = { json: 0, tsv: 0 } - if (!dataset || !dataset.fileAccessor || !dataset.fileAccessor.organizedPaths) { - return counts - } - for (const pathGroup of dataset.fileAccessor.organizedPaths.values()) { - const jsonFiles = pathGroup.get('json') - if (jsonFiles) { - counts.json += jsonFiles.length - } - const tsvFiles = pathGroup.get('tsv') - if (tsvFiles) { - counts.tsv += tsvFiles.length - } - } - return counts - } - - const handleClear = () => { - setDataset(null) - setErrors([]) - setDownloadableErrors([]) - setSuccessMessage('') - setFatalError('') - setFileInputKey(Date.now()) - setCheckWarnings(false) - setLimitErrors(false) - } - - const handleFolderSelect = async (selectedFiles) => { - if (!selectedFiles || selectedFiles.length === 0) { - return - } - const numFiles = selectedFiles.length - setIsLoading(true) - setErrors([]) - setDownloadableErrors([]) - setDataset(null) - setSuccessMessage('') - setFatalError('') - - const [createdDataset, issues] = await BidsDataset.create(selectedFiles, BidsWebAccessor) - - const issuesForDownload = BidsHedIssue.processIssues(issues, checkWarnings, false) - setDownloadableErrors(issuesForDownload) - const processedIssues = BidsHedIssue.processIssues(issues, checkWarnings, limitErrors) - if (processedIssues.length > 0) { - setErrors(processedIssues) - setDataset(null) - } else if (createdDataset) { - setDataset(createdDataset) - const { json: numJsonFiles, tsv: numTsvFiles } = getFileCounts(createdDataset) - setSuccessMessage( - `${numFiles} total files: ${numJsonFiles} json and ${numTsvFiles} tsv HED files. Ready to validate.`, - ) - } - setIsLoading(false) - } - - const handleValidate = async () => { - if (!dataset) { - return - } - setIsLoading(true) - setErrors([]) - setDownloadableErrors([]) - setSuccessMessage('') - setFatalError('') - let issues = [] - try { - setValidationStatus('Validating sidecars...') - issues = dataset.validateSidecars() - - const processedSidecarIssues = BidsHedIssue.processIssues(issues, checkWarnings, limitErrors) - if (processedSidecarIssues.some((issue) => issue.severity === 'error')) { - setErrors(processedSidecarIssues) - setDownloadableErrors(BidsHedIssue.processIssues(issues, checkWarnings, false)) - setFatalError('Validation cannot continue due to serious sidecar errors.') - setIsLoading(false) - setValidationStatus('') - return - } - setSuccessMessage('Preliminary sidecar validation passed. Continuing with TSV validation...') - setValidationStatus('Validating TSV files...') - issues = issues.concat(await dataset.validateTsvFiles()) - } catch (err) { - console.error('[ValidateDatasetApp] Error during validation:', err) - issues = BidsHedIssue.transformToBids([err], { path: 'Dataset Validation' }) - } finally { - const processedIssues = BidsHedIssue.processIssues(issues, checkWarnings, limitErrors) - if (limitErrors) { - const issuesForDownload = BidsHedIssue.processIssues(issues, checkWarnings, false) - setDownloadableErrors(issuesForDownload) - } else { - setDownloadableErrors(processedIssues) - } - if (processedIssues.length > 0) { - setErrors(processedIssues) - } else { - setSuccessMessage('No validation errors found.') - } - setIsLoading(false) - setValidationStatus('') - } - } - - return ( -
-
-
- - ← Back to Home - -

Validate a dataset

-

- Upload a BIDS dataset folder to check for HED errors. -
- This tool is browser-based -- all data remains local. -

-
-
-
- -
- {/* Checkboxes for validation options */} -
-
- setCheckWarnings(e.target.checked)} - className="h-4 w-4 text-blue-600 border-gray-300 rounded focus:ring-blue-500 dark:focus:ring-blue-600 dark:ring-offset-gray-800 focus:ring-2 dark:bg-gray-700 dark:border-gray-600" - /> - -
-
- setLimitErrors(e.target.checked)} - className="h-4 w-4 text-blue-600 border-gray-300 rounded focus:ring-blue-500 dark:focus:ring-blue-600 dark:ring-offset-gray-800 focus:ring-2 dark:bg-gray-700 dark:border-gray-600" - /> - -
-
-
- - -
- {successMessage && ( -
-

{successMessage}

-
- )} - {fatalError && ( -
-

{fatalError}

-
- )} - {errors.length > 0 && } -
-
-
- ) -} - -// --- Mount the App to the DOM --- - -const rootElement = document.getElementById('root') -if (!rootElement) { - const newRoot = document.createElement('div') - newRoot.id = 'root' - document.body.appendChild(newRoot) -} - -const root = createRoot(document.getElementById('root')) -root.render( - - - , -) diff --git a/browser/src/validate_file.jsx b/browser/src/validate_file.jsx deleted file mode 100644 index c0f630b5..00000000 --- a/browser/src/validate_file.jsx +++ /dev/null @@ -1,224 +0,0 @@ -import React, { useState } from 'react' -import { createRoot } from 'react-dom/client' -import { FileInput } from './components/FileInput' -import { ErrorDisplay } from './components/ErrorDisplay' -import { - BidsHedIssue, - BidsJsonFile, - BidsSidecar, - BidsTsvFile, - buildBidsSchemas, -} from '@hed-javascript-root/src/bids/index.js' -import { buildSchemasFromVersion } from './schema/init.js' -import { generateIssue, IssueError } from '@hed-javascript-root/src/issues/issues.js' -import parseTSV from '@hed-javascript-root/src/bids/tsvParser.js' - -// --- Main Application Component --- - -function ValidateFileApp() { - const [tsvFile, setTsvFile] = useState(null) - const [jsonFile, setJsonFile] = useState(null) - const [hedVersion, setHedVersion] = useState('8.4.0') - const [errors, setErrors] = useState([]) - const [downloadableErrors, setDownloadableErrors] = useState([]) - const [isLoading, setIsLoading] = useState(false) - const [checkWarnings, setCheckWarnings] = useState(false) - const [limitErrors, setLimitErrors] = useState(false) // This state is not used by performHedValidation yet - const [fileInputKey, setFileInputKey] = useState(Date.now()) - const [successMessage, setSuccessMessage] = useState('') - const [validated, setValidated] = useState(false) - - function handleClear() { - setTsvFile(null) - setJsonFile(null) - setHedVersion('8.4.0') - setErrors([]) - setDownloadableErrors([]) - setSuccessMessage('') - setValidated(false) - setFileInputKey(Date.now()) - setCheckWarnings(false) - setLimitErrors(false) - } - - /** - * Handles the validation process for the selected TSV and JSON files. - * - * This function performs the following steps: - * 1. Sets the loading state and clears previous errors and success messages. - * 2. Loads the specified HED schema version(s). - * 3. Reads the content of the TSV and JSON files. - * 4. Parses the JSON sidecar. - * 5. Performs validation on the TSV data using the HED schemas and sidecar. - * 6. Updates the state with any validation issues or a success message. - * 7. Resets the loading state. - */ - async function handleValidation() { - setIsLoading(true) - setErrors([]) - setDownloadableErrors([]) - setSuccessMessage('') - setValidated(true) - let issues = [] - let defaultPath = 'HED schema input' - - try { - // Load HED Schemas - defaultPath = 'HED schema input' - const hedSchemas = await buildSchemasFromVersion(hedVersion) - - defaultPath = jsonFile.name - const jsonText = await jsonFile.text() - const jsonData = JSON.parse(jsonText) - const jsonFileObject = { name: jsonFile.name, path: jsonFile.name } - const bidsSidecar = new BidsSidecar(jsonFile.name, jsonFileObject, jsonData) - const sidecarIssues = bidsSidecar.validate(hedSchemas) - const sidecarErrors = sidecarIssues.filter((issue) => issue.severity === 'error') - - if (sidecarErrors.length > 0) { - issues = sidecarIssues - } else { - const tsvText = await tsvFile.text() - const parsedTsv = parseTSV(tsvText) - const tsvFileObject = { name: tsvFile.name, path: tsvFile.name, file: tsvFile } - const bidsTsvFile = new BidsTsvFile(tsvFile.name, tsvFileObject, parsedTsv, jsonData, hedSchemas.definitions) - issues = bidsTsvFile.validate(hedSchemas) - } - } catch (err) { - issues = BidsHedIssue.transformToBids([err], { path: defaultPath }) - } finally { - const issuesForDownload = BidsHedIssue.processIssues(issues, checkWarnings, false) - setDownloadableErrors(issuesForDownload) - const processedIssues = BidsHedIssue.processIssues(issues, checkWarnings, limitErrors) - if (processedIssues.length > 0) { - setErrors(processedIssues) - } else { - setSuccessMessage('No validation issues found.') - } - setIsLoading(false) - } - } - - return ( -
-
-
- - ← Back to Home - -

Validate a file

-

- Validate HED in BIDS-style TSV file and corresponding JSON sidecar. -
- This tool is browser-based -- all data remains local. -

-
- -
- {/* Container for the file inputs with increased vertical spacing */} -
- - -
- - {/* HED Version Input */} -
-
- - setHedVersion(e.target.value)} - title="enter the version of the HED schema to use (separate multiple schema versions with commas)" - className="block w-full px-3 py-2 bg-white border border-gray-300 rounded-md shadow-sm placeholder-gray-400 focus:outline-none focus:ring-blue-500 focus:border-blue-500 sm:text-sm dark:bg-gray-700 dark:border-gray-600 dark:placeholder-gray-400 dark:text-white" - /> -
-
- - {/* Checkboxes for validation options */} -
-
- setCheckWarnings(e.target.checked)} - className="h-4 w-4 text-blue-600 border-gray-300 rounded focus:ring-blue-500 dark:focus:ring-blue-600 dark:ring-offset-gray-800 focus:ring-2 dark:bg-gray-700 dark:border-gray-600" - /> - -
-
- setLimitErrors(e.target.checked)} - className="h-4 w-4 text-blue-600 border-gray-300 rounded focus:ring-blue-500 dark:focus:ring-blue-600 dark:ring-offset-gray-800 focus:ring-2 dark:bg-gray-700 dark:border-gray-600" - /> - -
-
- -
- - -
- - {validated && successMessage && ( -
-

{successMessage}

-
- )} - {validated && errors.length > 0 && } -
-
-
- ) -} - -// --- Mount the App to the DOM --- - -const container = document.getElementById('root') -const root = createRoot(container) -root.render( - - - , -) diff --git a/browser/validate_dataset.html b/browser/validate_dataset.html deleted file mode 100644 index 677b7302..00000000 --- a/browser/validate_dataset.html +++ /dev/null @@ -1,26 +0,0 @@ - - - - - - - Validate dataset - - - - - - - - -
- - - diff --git a/browser/validate_file.html b/browser/validate_file.html deleted file mode 100644 index 3cc85b20..00000000 --- a/browser/validate_file.html +++ /dev/null @@ -1,26 +0,0 @@ - - - - - - - Validate File - - - - - - - - -
- - - diff --git a/browser/vite-importer-transformer.cjs b/browser/vite-importer-transformer.cjs deleted file mode 100644 index 7dd1de7a..00000000 --- a/browser/vite-importer-transformer.cjs +++ /dev/null @@ -1,7 +0,0 @@ -module.exports = { - process() { - return { - code: 'export const schemaData = {};', - } - }, -} diff --git a/browser/vite.config.js b/browser/vite.config.js deleted file mode 100644 index 76b37d84..00000000 --- a/browser/vite.config.js +++ /dev/null @@ -1,111 +0,0 @@ -import { defineConfig } from 'vite' -import react from '@vitejs/plugin-react' -import fs from 'node:fs' -import * as path from 'node:path' -import { createRequire } from 'node:module' // Add this line -const require = createRequire(import.meta.url) // Add this line - -// This configuration combines your specific project needs (React, multi-page, custom scripts) -// with a dynamic base path for seamless local development and GitHub Pages deployment. - -export default defineConfig(({ command }) => { - // 'command' will be 'serve' for local development (npm run dev) - // and 'build' for production (npm run build) - const isProduction = command === 'build' - - return { - // The 'base' is now dynamic. - // For production builds, it's set to your repository name '/hed-javascript/'. - // For local development, it defaults to '/', allowing assets to load correctly. - // NOTE: This setting can be overridden by the '--base' flag in your GitHub Action. - base: isProduction ? '/hed-javascript/' : '/', - - define: { - // Add this section - __VITE_ENV__: true, - }, - - optimizeDeps: { - // Add this section - include: ['lodash', 'path-browserify'], // Added 'path-browserify' - }, - - resolve: { - alias: { - path: require.resolve('path-browserify'), - 'node:path': require.resolve('path-browserify'), // Modified this line - stream: require.resolve('readable-stream'), - timers: require.resolve('timers-browserify'), // Modified this line - '@hed-javascript-root': path.resolve(__dirname, '..'), // Added alias to project root - // Browser-compatible version of files utility - '../utils/files': path.resolve(__dirname, 'src/utils/files.js'), - }, - }, - - build: { - // This matches the output directory in your GitHub Actions workflow. - outDir: 'buildweb', - - // Preserving your multi-page application setup. - rollupOptions: { - input: { - main: path.resolve(__dirname, 'index.html'), - validate_dataset: path.resolve(__dirname, 'validate_dataset.html'), - validate_file: path.resolve(__dirname, 'validate_file.html'), - }, - output: { - manualChunks(id) { - if (id.includes('node_modules/lodash')) { - return 'lodash' - } - // You could add other large dependencies here - }, - }, - }, - // Best practice: Generates a manifest file. - manifest: true, - - // Best practice: Helps with debugging in production. - sourcemap: true, - }, - - plugins: [ - // Your React plugin. - react(), - - // Your custom plugin to copy documentation after the build. - isProduction && { - name: 'copy-api-docs-after-build', - closeBundle: () => { - const sourceDir = path.resolve(__dirname, '../docs/html') - const targetDir = path.resolve(__dirname, 'buildweb/docs') - - // Check if the source directory exists before attempting to copy. - if (fs.existsSync(sourceDir)) { - // Using fs.cpSync for modern Node.js versions. - fs.cpSync(sourceDir, targetDir, { recursive: true }) - console.log('✅ Copied docs/html → buildweb/docs after build') - } else { - console.warn('⚠️ docs/html not found — skipping copy') - } - }, - }, - - // Custom plugin to copy schemas after the build. - isProduction && { - name: 'copy-schemas-after-build', - closeBundle: () => { - const sourceDir = path.resolve(__dirname, '../src/data/schemas') - const targetDir = path.resolve(__dirname, 'buildweb/schemas') - - if (fs.existsSync(sourceDir)) { - fs.cpSync(sourceDir, targetDir, { recursive: true }) - console.log('✅ Copied src/data/schemas → buildweb/schemas after build') - } else { - console.warn('⚠️ src/data/schemas not found — skipping copy') - } - }, - }, - ], - } -}) diff --git a/browser/vitest.config.js b/browser/vitest.config.js deleted file mode 100644 index 0b99b561..00000000 --- a/browser/vitest.config.js +++ /dev/null @@ -1,38 +0,0 @@ -import { defineConfig } from 'vitest/config' -import { resolve } from 'node:path' -import { fileURLToPath } from 'node:url' - -const __dirname = fileURLToPath(new URL('.', import.meta.url)) - -// Treat *.xml imports as raw text strings (matching esbuild's text loader used -// by the package build). Without this, Vite's import-analyzer tries to parse -// the bundled HED schema XML files as JavaScript and fails. -const xmlAsText = { - name: 'xml-as-text', - enforce: 'pre', - transform(code, id) { - if (id.endsWith('.xml')) { - return { code: `export default ${JSON.stringify(code)};`, map: null } - } - return null - }, -} - -export default defineConfig({ - assetsInclude: ['**/*.xml'], - plugins: [xmlAsText], - test: { - environment: 'jsdom', - include: ['src/**/*.spec.js'], - globals: true, - }, - resolve: { - alias: { - '@': resolve(__dirname, './src'), - }, - }, - define: { - // Define the Vite environment variable that the config.js file checks for - __VITE_ENV__: 'true', - }, -}) From 71ba1f5221c52f5d5e547f7c5cf80d9c83542866 Mon Sep 17 00:00:00 2001 From: Kay Robbins Date: Wed, 6 May 2026 16:38:44 -0500 Subject: [PATCH 2/2] Updated the README --- .github/copilot-instructions.md | 16 ++++++++-------- .github/workflows/tests.yml | 2 -- README.md | 4 ++-- 3 files changed, 10 insertions(+), 12 deletions(-) diff --git a/.github/copilot-instructions.md b/.github/copilot-instructions.md index be1cb0d7..7a48ec86 100644 --- a/.github/copilot-instructions.md +++ b/.github/copilot-instructions.md @@ -115,14 +115,14 @@ do not remove it or those imports will fail in tests. CI runs on every push/PR to `main`. Replicate these locally before opening a PR: -| Workflow | Command | Notes | -| --------------------- | --------------------------------------------------- | -------------------------------------------------- | -| `tests.yml` | `npm ci ; npm test` | Runs `tests/` suite on Node 22, lts/\*, latest | -| `tests.yml` | `npm ci ; npm run testSpecs` | Runs `spec_tests/` suite | -| `test-types.yml` | `npm ci ; npm run build ; npm pack` then type-check | **Build required before type check** | -| `codeql.yml` | automatic | CodeQL security scan (JavaScript) | -| `codespell.yaml` | automatic | Spell check source files | -| `links.yml` | automatic | Lychee link checker (configured via `lychee.toml`) | +| Workflow | Command | Notes | +| ---------------- | --------------------------------------------------- | -------------------------------------------------- | +| `tests.yml` | `npm ci ; npm test` | Runs `tests/` suite on Node 22, lts/\*, latest | +| `tests.yml` | `npm ci ; npm run testSpecs` | Runs `spec_tests/` suite | +| `test-types.yml` | `npm ci ; npm run build ; npm pack` then type-check | **Build required before type check** | +| `codeql.yml` | automatic | CodeQL security scan (JavaScript) | +| `codespell.yaml` | automatic | Spell check source files | +| `links.yml` | automatic | Lychee link checker (configured via `lychee.toml`) | **Type-check locally (without packing):** diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index 04cf86d2..fd0da138 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -55,5 +55,3 @@ jobs: run: npm ci - name: Run JSON spec tests with Node.js ${{ matrix.node-version }} run: npm run testSpecs - - diff --git a/README.md b/README.md index 87f1c97c..7b7fd66a 100644 --- a/README.md +++ b/README.md @@ -23,11 +23,11 @@ A sample of current `hed-validator` usage in BIDS can be found in the BIDS valid ## Online validation A browser-based validator that uses this package is available at -[hed-standard.github.io/hed-web](https://hed-standard.github.io/hed-web/). +[www.hedtags.org/hed-web](https://www.hedtags.org/hed-web/). This online validator allows users to validate HED annotations in a web browser without needing to install any software or upload files to a server. The API documentation for this package is available at -[hed-standard.github.io/hed-javascript](https://hed-standard.github.io/hed-javascript/). +[www.hedtags.org/hed-javascript](https://www.hedtags.org/hed-javascript/). A number of tools for HED, including validation are also available in a Python-based [online validator](https://hedtools.org/hed).