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Bug: Intermittent failure to register jira-write MCP tools in active sessions #1506

@janisz

Description

@janisz

🐛 Bug Description

Summary: Intermittent failure to register jira-write MCP tools in scheduled sessions.

Expected Behavior: When the jira-write setting is toggled On, all Jira write tools (e.g., jira_add_comment, jira_update_issue) should be registered and callable by the agent.

Actual Behavior: The agent reports that only read operations are available in the mcp__mcp-atlassian__* namespace, claiming write tools are not registered as callable functions despite the setting being enabled.

🔄 Steps to Reproduce

  1. Go to Workspace Settings -> Jira Integration.
  2. Toggle jira-write to On.
  3. Initiate a workflow requiring Jira write access (e.g., run /triage --comment).
  4. Observe the agent response stating jira_add_comment is not a registered tool.

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