diff --git a/onprc_ehr/resources/queries/study/demographicsParents.query.xml b/onprc_ehr/resources/queries/study/demographicsParents.query.xml index e3ef57f38..43f12bfe3 100644 --- a/onprc_ehr/resources/queries/study/demographicsParents.query.xml +++ b/onprc_ehr/resources/queries/study/demographicsParents.query.xml @@ -8,7 +8,7 @@ true - Dam + Genetic Dam study animal @@ -31,8 +31,16 @@ id + + Surrogate Dam + + study + animal + id + + - Genetic Dam + Genetic Dam Type study animal @@ -42,6 +50,14 @@ Number of Parents Known + + + Birth Record Dam + + + + Surrogate Dam + diff --git a/onprc_ehr/resources/queries/study/demographicsParents.sql b/onprc_ehr/resources/queries/study/demographicsParents.sql index 91f7029d2..2979896f4 100644 --- a/onprc_ehr/resources/queries/study/demographicsParents.sql +++ b/onprc_ehr/resources/queries/study/demographicsParents.sql @@ -16,12 +16,11 @@ SELECT d.id, - coalesce(p2.parent, b.dam) as dam, + p2.parent as geneticdam, CASE WHEN p2.parent IS NOT NULL THEN p2.method - WHEN b.dam IS NOT NULL THEN 'Observed' - ELSE null - END as damType, + ELSE null + END as geneticdamType, coalesce(p1.parent, b.sire) as sire, CASE @@ -31,24 +30,28 @@ SELECT END as sireType, p3.parent as fosterMom, p3.method as fosterType, + p4.parent as SurrogateDam, + p4.method as SurrogateType, + b.dam as birthdam, (CASE WHEN p3.parent IS NOT NULL THEN 1 ELSE 0 END + + CASE WHEN p4.parent IS NOT NULL THEN 1 ELSE 0 END + CASE WHEN coalesce(p2.parent, b.dam) IS NOT NULL THEN 1 ELSE 0 END + CASE WHEN coalesce(p1.parent, b.sire) IS NOT NULL THEN 1 ELSE 0 END) as numParents, - greatest(d.modified, p1.modified, p2.modified, p3.modified, b.modified) as modified + greatest(d.modified, p1.modified, p2.modified, p3.modified, p4.modified, b.modified) as modified FROM study.demographics d LEFT JOIN ( select p1.id, min(p1.method) as method, max(p1.parent) as parent, max(p1.modified) as modified FROM study.parentage p1 - WHERE (p1.method = 'Genetic' OR p1.method = 'Provisional Genetic') AND p1.relationship = 'Sire' AND p1.enddate IS NULL + WHERE p1.method in ('Genetic','Provisional Genetic','Observed') AND p1.relationship = 'Sire' AND p1.enddate IS NULL GROUP BY p1.Id ) p1 ON (d.Id = p1.id) LEFT JOIN ( select p2.id, min(p2.method) as method, max(p2.parent) as parent, max(p2.modified) as modified FROM study.parentage p2 - WHERE (p2.method = 'Genetic' OR p2.method = 'Provisional Genetic') AND p2.relationship = 'Dam' AND p2.enddate IS NULL + WHERE p2.method in ('Genetic','Provisional Genetic','Observed') AND p2.relationship = 'Dam' AND p2.enddate IS NULL GROUP BY p2.Id ) p2 ON (d.Id = p2.id) @@ -58,5 +61,12 @@ LEFT JOIN ( WHERE p3.relationship = 'Foster Dam' AND p3.enddate IS NULL GROUP BY p3.Id ) p3 ON (d.Id = p3.id) +LEFT JOIN ( + select p4.id, min(p4.method) as method, max(p4.parent) as parent, max(p4.modified) as modified + FROM study.parentage p4 + WHERE p4.relationship = 'Surrogate Dam' AND p4.enddate IS NULL + GROUP BY p4.Id +) p4 ON (d.Id = p4.id) + LEFT JOIN study.birth b ON (b.id = d.id)